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omssa identification importer  (Nonlinear Dynamics)
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Nonlinear Dynamics omssa identification importer
Proteins were released from cells by mechanical disruption and then separated on a 1D gel prior to LC-MS/MS analysis. The MS/MS spectra were searched with <t>OMSSA</t> against databases (see ) containing sequences to be expected in faecal material. All MS spectra were aligned over different runs and peptide identification was assigned to the detected features (route I). To functionally annotate the identified peptides and proteins, BLAST analyses were performed against the COG and NCBI non-redundant (nr) databases (route II).
Omssa Identification Importer, supplied by Nonlinear Dynamics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Proteins were released from cells by mechanical disruption and then separated on a 1D gel prior to LC-MS/MS analysis. The MS/MS spectra were searched with OMSSA against databases (see ) containing sequences to be expected in faecal material. All MS spectra were aligned over different runs and peptide identification was assigned to the detected features (route I). To functionally annotate the identified peptides and proteins, BLAST analyses were performed against the COG and NCBI non-redundant (nr) databases (route II).

Journal: PLoS ONE

Article Title: Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions

doi: 10.1371/journal.pone.0029913

Figure Lengend Snippet: Proteins were released from cells by mechanical disruption and then separated on a 1D gel prior to LC-MS/MS analysis. The MS/MS spectra were searched with OMSSA against databases (see ) containing sequences to be expected in faecal material. All MS spectra were aligned over different runs and peptide identification was assigned to the detected features (route I). To functionally annotate the identified peptides and proteins, BLAST analyses were performed against the COG and NCBI non-redundant (nr) databases (route II).

Article Snippet: Protein identification results obtained using OMSSA (see below) were imported to Progenesis LC-MS with a customised OMSSA identification importer from Nonlinear Dynamics.

Techniques: Disruption, Liquid Chromatography with Mass Spectroscopy, Tandem Mass Spectroscopy